xmipptomo.protocols.protocol_apply_alignment_subtomo module

class xmipptomo.protocols.protocol_apply_alignment_subtomo.OutputApplyTransform(value)[source]

Bases: enum.Enum

An enumeration.

outputAverage = <class 'tomo.objects.AverageSubTomogram'>
outputSubtomograms = <class 'tomo.objects.SetOfSubTomograms'>
class xmipptomo.protocols.protocol_apply_alignment_subtomo.XmippProtApplyTransformSubtomo(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

Apply alignment matrix and produce a new setOfSubtomograms, with each subtomogram aligned to its reference.

applyAlignmentStep(inputFn)[source]
convertInputStep(outputFn)[source]
createOutputStep()[source]