topaz.protocols.protocol_topaz_picking module

class topaz.protocols.protocol_topaz_picking.TopazProtPicking(**args)[source]

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto, topaz.protocols.protocol_base.ProtTopazBase

Perform a picking using a topaz model

ADD_MODEL_GENERAL = 1
ADD_MODEL_PRETRAINED = 0
ADD_MODEL_TRAIN_TYPES = ['TopazTrained', 'TopazGeneral']
GENERAL_MODELS = ['resnet16_u64', 'resnet16_u32', 'resnet8_u64', 'resnet8_u32']
MODEL_RESNET16_U32 = 1
MODEL_RESNET16_U64 = 0
MODEL_RESNET8_U32 = 3
MODEL_RESNET8_U64 = 2
getPickingFileName(micList, key)[source]
readCoordsFromMics(outputDir, micDoneList, outputCoords)[source]

Read the coordinates from a given list of micrographs