topaz.protocols.protocol_base module

class topaz.protocols.protocol_base.ProtTopazBase(**args)[source]

Bases: pwem.protocols.protocol.EMProtocol

Base for topaz protocols including preprocessing parameters and methods

getDenoiseArgs(inputDir, outDir)[source]
getLastEpochModel(modelsDir, ext='.sav')[source]

Return the last trained model, in alphabetic order (last trained epoch) in modelsDir

getOutputModelPath()[source]
getPreprocessArgs(inputDir, outDir)[source]