eman2.protocols.protocol_tomo_extraction module

class eman2.protocols.protocol_tomo_extraction.EmanProtTomoExtraction(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

Extraction for Tomo. Uses EMAN2 e2spt_boxer_old.py.

OUTPUT_PREFIX = 'outputSetOfSubtomogram'
convertOutput()[source]
createOutputStep()[source]
extractParticles()[source]
getInputTomograms()[source]

Return the tomogram associated to the ‘SetOfCoordinates3D’ or ‘Other’ tomograms.

readSetOfSubTomograms(tomoFile, outputSubTomogramsSet, coordSet, volId)[source]
writeSetOfCoordinates3D()[source]