eman2.protocols.protocol_autopick_sparx module

class eman2.protocols.protocol_autopick_sparx.SparxGaussianProtPicking(**kwargs)[source]

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto

Automated particle picker for SPA. Uses Sparx gaussian picker. For more information see http://sparx-em.org/sparxwiki/e2boxer

createOutputStep()[source]
getCoordsDir()[source]
getFiles()[source]
initSparxDb(lowerThreshold, higherThreshold, boxSize, gaussWidth, useVarImg, doInvert)[source]
readCoordsFromMics(workingDir, micList, coordSet)[source]

This method should be implemented in subclasses to read the coordinates from a given list of micrographs.