dynamo.protocols.protocol_extraction module

class dynamo.protocols.protocol_extraction.DynamoExtraction(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

Extraction of subtomograms using Dynamo

createOutputStep()[source]
getInputTomograms()[source]

Return the tomogram associated to the ‘SetOfCoordinates3D’ or ‘Other’ tomograms.

invertContrastStep(ind)[source]
launchDynamoExtractStep()[source]
readSetOfSubTomograms(workDir, outputSubTomogramsSet, coordSet)[source]
writeMatlabCode()[source]
writeSetOfCoordinates3D()[source]