continuousflex package

Subpackages

• continuousflex.protocols package
  • Subpackages
    • continuousflex.protocols.pdb package
      • Submodules
      • Module contents
    • continuousflex.protocols.utilities package
      • Subpackages
      • Submodules
      • Module contents
  • Submodules
    • continuousflex.protocols.convert module
    • continuousflex.protocols.data module
    • continuousflex.protocols.protocol_apply_volumeset_alignment module
    • continuousflex.protocols.protocol_batch_cluster module
    • continuousflex.protocols.protocol_batch_cluster_heteroflow module
    • continuousflex.protocols.protocol_batch_cluster_vol module
    • continuousflex.protocols.protocol_denoise_volumes module
    • continuousflex.protocols.protocol_genesis module
    • continuousflex.protocols.protocol_heteroflow module
    • continuousflex.protocols.protocol_heteroflow_dimred module
    • continuousflex.protocols.protocol_histogram_matching module
    • continuousflex.protocols.protocol_image_synthesize module
    • continuousflex.protocols.protocol_missing_wedge_filling module
    • continuousflex.protocols.protocol_nma module
    • continuousflex.protocols.protocol_nma_alignment module
    • continuousflex.protocols.protocol_nma_alignment_vol module
    • continuousflex.protocols.protocol_nma_base module
    • continuousflex.protocols.protocol_nma_choose module
    • continuousflex.protocols.protocol_nma_dimred module
    • continuousflex.protocols.protocol_nma_dimred_vol module
    • continuousflex.protocols.protocol_pdb_dimred module
    • continuousflex.protocols.protocol_structure_mapping module
    • continuousflex.protocols.protocol_subtomogram_averaging module
    • continuousflex.protocols.protocol_subtomogram_refine_alignment module
    • continuousflex.protocols.protocol_subtomograms_classify module
    • continuousflex.protocols.protocol_subtomogrmas_synthesize module
  • Module contents
• continuousflex.viewers package
  • Subpackages
    • continuousflex.viewers.nma_gui package
      • Submodules
      • Module contents
    • continuousflex.viewers.nma_vol_gui package
      • Submodules
      • Module contents
  • Submodules
    • continuousflex.viewers.nma_plotter module
    • continuousflex.viewers.plotter module
    • continuousflex.viewers.plotter_vol module
    • continuousflex.viewers.viewer_genesis module
    • continuousflex.viewers.viewer_heteroflow module
    • continuousflex.viewers.viewer_heteroflow_dimred module
    • continuousflex.viewers.viewer_image_synthesize module
    • continuousflex.viewers.viewer_nma module
    • continuousflex.viewers.viewer_nma_alignment module
    • continuousflex.viewers.viewer_nma_alignment_vol module
    • continuousflex.viewers.viewer_nma_dimred module
    • continuousflex.viewers.viewer_nma_dimred_vol module
    • continuousflex.viewers.viewer_pdb_dimred module
    • continuousflex.viewers.viewer_structure_mapping module
    • continuousflex.viewers.viewer_subtomograms_classify module
    • continuousflex.viewers.viewer_subtomograms_synthesize module
  • Module contents

Submodules

• continuousflex.bibtex module
• continuousflex.constants module
• continuousflex.wizards module

Module contents

class continuousflex.Plugin

Bases: pwem.Plugin

classmethod defineBinaries(env)

Define required binaries in the given Environment.

classmethod getEnviron(xmippFirst=True)

Create the needed environment for Xmipp programs.

classmethod isVersionActive()