continuousflex.protocols.protocol_subtomograms_classify module

class continuousflex.protocols.protocol_subtomograms_classify.FlexProtSubtomoClassify(**kwargs)[source]

Bases: pwem.protocols.protocol_3d.ProtAnalysis3D

Protocol applying post alignment classification on subtomograms.

cc(v1, v2)[source]

Compute the Normalized Cross Correlation between the two volumes. @param v1: volume 1. @param v2: volume 2. @return: NCC.

createOutputStep()[source]
findTotalAverage()[source]
find_covariance_matrix()[source]
getAngleY()[source]
getDeformationFile()[source]
getOutputMatrixFile()[source]
getSamplingRate()[source]
getSubtomoMetaData()[source]
getTiltRange()[source]
getVolumeSize()[source]
normalize(v)[source]

Normalize a volume. @param v: input volume. @return: Normalized volume.

performHierarchicalClustering()[source]
performKmeansClustering()[source]
subtomo_wedge_align(mdSubtomo)[source]