continuousflex.protocols.protocol_subtomogram_averaging module

class continuousflex.protocols.protocol_subtomogram_averaging.FlexProtSubtomogramAveraging(**kwargs)

Bases: pwem.protocols.protocol_3d.ProtAnalysis3D

Protocol for subtomogram averaging. This protocol has two modes of operation. the first is to perform subtomogram averaging using Fast Rotational Matching. The second mode is to import a previously performed alignment using this protocol, Dynamo, or Artiatomi. If an alignment is imported, the rigid-body parameters will be used to re-create the average structure.

adaptDynamoStep(dynamoTable)

adaptTomboxStep(Table)

adaptXmippStep(Table)

convertInputStep()

createOutputStep()

doAlignmentStep()