continuousflex.protocols.protocol_heteroflow_dimred module

class continuousflex.protocols.protocol_heteroflow_dimred.FlexProtDimredHeteroFlow(**kwargs)

Bases: pwem.protocols.protocol_3d.ProtAnalysis3D

This protocol will take volumes with optical flows, it will operate on the correlation mat and will project it onto a reduced space

convertInputStep(deformationFile)

Copy the data.csv file that will serve as input for dimensionality reduction.

createOutputStep()

getDeformationFile()

getInputParticles()

Get the particles of the input optical flow protocol.

getMethodName()

getOutputMatrixFile()

getProjectorFile()

performDimredStep(deformationsFile, method, extraParams, rows, reducedDim)