continuousflex.protocols.protocol_image_synthesize module

class continuousflex.protocols.protocol_image_synthesize.FlexProtSynthesizeImages(**kwargs)[source]

Bases: pwem.protocols.protocol_3d.ProtAnalysis3D

Protocol for synthesizing images.

apply_noise_and_ctf()[source]
copy_deformations()[source]
createOutputStep()[source]
generate_deformations()[source]
generate_rotation_and_shift()[source]
generate_volume_from_pdb()[source]
generate_zero_rotation_and_shift()[source]
getInputPdb()[source]

Return the Pdb object associated with the normal modes.

get_number_of_volumes()[source]
nma_deform_pdb(fnPDB, fnModeList, fnOut, deformList)[source]
project_volumes()[source]