continuousflex.protocols.protocol_subtomogrmas_synthesize module

class continuousflex.protocols.protocol_subtomogrmas_synthesize.FlexProtSynthesizeSubtomo(**kwargs)[source]

Bases: pwem.protocols.protocol_3d.ProtAnalysis3D

Protocol for synthesizing subtomograms.

apply_noise_and_ctf()[source]
copy_deformations()[source]
createOutputStep()[source]
create_phantom()[source]
generate_copies_of_volume()[source]
generate_deformations()[source]
generate_rotation_and_shift()[source]
generate_volume_from_pdb()[source]
getInputPdb()[source]

Return the Pdb object associated with the normal modes.

get_number_of_volumes()[source]
map_volumes_to_tomogram()[source]
project_volumes()[source]
reconstruct()[source]