chimera.protocols.protocol_contacts module

class chimera.protocols.protocol_contacts.ChimeraProtContacts(**args)[source]

Bases: pwem.protocols.protocol.EMProtocol

Identifies interatomic clashes and contacts based on van der Waals radii

TetrahedralOrientation = ['222', 'z3']
chimeraClashesStep()[source]
commandDropView = 'DROP view IF EXISTS {viewName}'
endChimeraScript(firstValue, labelDict, outFiles, f)[source]
getChimeraScriptFileName1()[source]
getChimeraScriptFileName2()[source]
classmethod getClassPackageName()[source]
getDataBaseName()[source]
getSymmetrizedModelName()[source]
getTableName()[source]
getView1Name()[source]
getView2Name()[source]
parseFiles(outFiles, c)[source]
postProcessStep()[source]
prepareDataBase(drop=True)[source]
removeDuplicates(c)[source]
chimera.protocols.protocol_contacts.connectDB(sqliteFN, tableName=None)[source]