topaz.protocols.protocol_training module¶
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class
topaz.protocols.protocol_training.
TopazProtTraining
(**args)[source]¶ Bases:
pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto
Train the Topaz parameters for a picking
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convertInputStep
(inputCoordinates, scale, kfold)[source]¶ Converts a set of coordinates to box files and binaries to mrc if needed. It generates 2 folders 1 for the box files and another for the mrc files.
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preprocessStep
(scale, extra)[source]¶ Downsamples the micrographs with a factor determined by the scale parameter and normalize them with the per-micrograph scaled Gaussian mixture model
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