sphire.protocols.protocol_cryolo_training module

class sphire.protocols.protocol_cryolo_training.SphireProtCRYOLOTraining(**args)[source]

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePicking

Picks particles in a set of micrographs either manually or in a supervised mode.

MODEL = 'model.h5'
TRAIN = ['train_annotations', 'train_images']
convertInputStep()[source]

Converts a set of coordinates to box files and binaries to mrc if needed. It generates 2 folders 1 for the box files and another for the mrc files. To be passed (the folders as params for cryolo

createConfigStep()[source]
createOutputStep()[source]

Register the output model.

cryoloModelingStep(extraArgs='')[source]
getInputModel()[source]
getOutputModelPath()[source]
runCryoloTrain(w, extraArgs='')[source]