reliontomo package

Subpackages

• reliontomo.cmd package
  • Submodules
    • reliontomo.cmd.compareStarFiles module
  • Module contents
• reliontomo.convert package
  • Submodules
    • reliontomo.convert.convert30_tomo module
    • reliontomo.convert.convert40_tomo module
    • reliontomo.convert.convertBase module
  • Module contents
• reliontomo.protocols package
  • Submodules
    • reliontomo.protocols.protocol_3d_classify_subtomograms module
    • reliontomo.protocols.protocol_base_import_from_star module
    • reliontomo.protocols.protocol_base_make_pseusosubtomos_and_rec_particle module
    • reliontomo.protocols.protocol_base_per_part_per_tilt module
    • reliontomo.protocols.protocol_base_refine module
    • reliontomo.protocols.protocol_ctf_refine module
    • reliontomo.protocols.protocol_de_novo_initial_model module
    • reliontomo.protocols.protocol_edit_particles_star module
    • reliontomo.protocols.protocol_import_coordinates_from_star module
    • reliontomo.protocols.protocol_import_subtomograms_from_star module
    • reliontomo.protocols.protocol_make_pseudo_subtomos module
    • reliontomo.protocols.protocol_post_process module
    • reliontomo.protocols.protocol_prepare_data module
    • reliontomo.protocols.protocol_rec_particle_from_subtomograms module
    • reliontomo.protocols.protocol_reconstruc_particle_from_ts module
    • reliontomo.protocols.protocol_refine_subtomograms module
    • reliontomo.protocols.protocol_tomo_frame_align module
  • Module contents

Submodules

• reliontomo.bibtex module
• reliontomo.constants module
• reliontomo.objects module
• reliontomo.utils module
• reliontomo.wizards module

Module contents

class reliontomo.Plugin

Bases: relion.Plugin

classmethod defineBinaries(env)

Define required binaries in the given Environment.

static isRe40()

classmethod runRelionTomo(protocol, program, args, cwd=None, numberOfMpi=1)

Run Relion command from a given protocol.