reliontomo.convert.convertBase module

class reliontomo.convert.convertBase.ReaderTomo(starFile, dataTable)

Bases: object

class reliontomo.convert.convertBase.WriterTomo(**kwargs)

Bases: relion.convert.convert_base.WriterBase

reliontomo.convert.convertBase.checkSubtomogramFormat(subtomo, extraPath)

Convert the subtomograms into mrc format if they are in a different one. They will be created in extra folder generating a subdirectory for each tomogram found and the corresponding subtomograms contained on it.

reliontomo.convert.convertBase.genTransformMatrix(shiftx, shifty, shiftz, rot, tilt, psi, invert)

reliontomo.convert.convertBase.getTransformInfoFromCoordOrSubtomo(obj, calcInv=True)

reliontomo.convert.convertBase.getTransformMatrixFromRow(row, sRate=1, invert=True)