reliontomo.protocols.protocol_rec_particle_from_subtomograms module¶

class reliontomo.protocols.protocol_rec_particle_from_subtomograms.ProtRelionSubTomoReconstructAvg(**kwargs)[source]¶

Bases: pwem.protocols.protocol_3d.ProtReconstruct3D

This protocol reconstructs a volume using Relion. Reconstruct a volume from a given set of particles. The alignment parameters will be converted to a Relion star file and used as direction projections to reconstruct.

convertInputStep()[source]¶: Create the input file in STAR format as expected by Relion.

createOutputStep()[source]¶

inStarName = 'input_particles'¶

outTomoName = 'output_volume'¶

reconstructStep()[source]¶

class reliontomo.protocols.protocol_rec_particle_from_subtomograms.outputObjects(value)[source]¶

Bases: enum.Enum

An enumeration.

outputVolume = <tomo.objects.AverageSubTomogram object>¶