reliontomo.utils module

reliontomo.utils.genEnumParamDict(keyList)

reliontomo.utils.genOutputPseudoSubtomograms(prot, currentSamplingRate)

Centralized code to generate the output set of pseudosubtomograms for protocols make pseudosubtomograms, auto-refine, CTF refine and frame align

reliontomo.utils.genRelionParticles(extraPath, inOptSet, binningFactor=None, nParticles=None)

Generate a relionParticles object containing the files involved for the next protocol, considering that some protocols don’t generate the optimisation_set.star file. In that case, the input Object which represents it will be copied and, after that, this method will be used to update the corresponding attribute.

reliontomo.utils.getAbsPath(starFilePath, tomoFile)

If the paths of the files pointed from a star file are relative, they’ll be referred to the path of the star file. This method is used to consider that case.

reliontomo.utils.getProgram(program, nMpi)

Get the program name depending on the MPI use or not.

reliontomo.utils.isPseudoSubtomogram(subtomo)

reliontomo.utils.manageDims(fileName, z, n)