reliontomo.objects module

class reliontomo.objects.EnumRe4GenFilesProps(value)

Bases: enum.Enum

An enumeration.

class reliontomo.objects.PSubtomogram(fileName=None, samplingRate=None, ctfFile=None, tsId=None, classId=None, **kwargs)

Bases: pwem.objects.data.Volume

getCtfFile()

getTomoId()

class reliontomo.objects.SetOfPseudoSubtomograms(**kwargs)

Bases: pwem.objects.data.SetOfVolumes

ITEM_TYPE

alias of reliontomo.objects.PSubtomogram

class reliontomo.objects.StarFileComparer(starFile1, starFile2, table2Read)

Bases: object

compare(excludeLabelsList=None)

compareLabels()

compareSize()

compareValues(excludeLabelsList=None, tolerance=0.1)

property dataTable1

property dataTable2

reliontomo.objects.list2str(inList)

class reliontomo.objects.relionTomoMetadata(optimSetStar=None, relionBinning=None, tsSamplingRate=None, nParticles=0, **kwargs)

Bases: pwem.objects.data.EMObject

copyInfo(other)

property filesMaster

getCurrentSamplingRate()

getManifolds()

getNumParticles()

getParticles()

getReferenceFsc()

getRelionBinning()

getTomograms()

getTrajectories()

getTsSamplingRate()

updateGenFiles(extraPath)

Some protocols don’t generate the optimisation_set.star file. In that case, the input Object which represents it will be copied and, after that, this method will be used to update the corresponding attributes with the generated files.