Source code for localrec

# **************************************************************************
# *
# * Authors:    Yunior C. Fonseca Reyna (cfonseca@cnb.csic.es)
# *
# * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 2 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307  USA
# *
# *  All comments concerning this program package may be sent to the
# *  e-mail address 'scipion@cnb.csic.es'
# *
# **************************************************************************

"""
This sub-package contains data and protocol classes
wrapping Localized recontruction of subunits.
"""
import os
import pwem
from pyworkflow.utils import Environ
from localrec.constants import *
from localrec.convert import *

getXmippPath = pwem.Domain.importFromPlugin("xmipp3.base", 'getXmippPath')

__version__ = '3.0.3'
_logo = "localrec_logo.png"
_references = ['Ilca2015', 'Abrishami2020']

class Plugin(pwem.Plugin):
    _homeVar = LOCALREC_HOME
    _pathVars = [LOCALREC_HOME]

    @classmethod
    def _defineVariables(cls):
        pass

    @classmethod
    def getEnviron(cls):
        """ Setup the environment variables needed to launch localrec. """
        environ = Environ(os.environ)
        environ.update({
            'PATH': getXmippPath('bin'),
            'LD_LIBRARY_PATH': getXmippPath('lib')
        }, position=Environ.BEGIN)
        return environ

    @classmethod
    def validateInstallation(cls):
        pass

    @classmethod
    def isVersionActive(cls):
        return cls.getActiveVersion().startswith(V2_0)

    @classmethod
    def defineBinaries(cls, env):
        pass