gctf.protocols.program_gctf module¶

class gctf.protocols.program_gctf.ProgramGctf(protocol)[source]¶

Bases: object

Wrapper of Gctf program that will handle parameters definition and also execution of the program with the proper arguments. This class is not a Protocol, but it is related, since it can be used from protocols that perform CTF estimation.

classmethod defineInputParams(form)[source]¶: Define input parameters from this program into the given form.

classmethod defineProcessParams(form)[source]¶

getCommand(**kwargs)[source]¶: Return the program and arguments to be run. The input keywords argument should contain key-values for one micrograph or group of micrographs.

getExt()[source]¶

classmethod getVersion()[source]¶

classmethod isVersion118()[source]¶

parseOutput(filename)[source]¶: Retrieve defocus U, V and angle from the output file of the program execution.

parseOutputAsCtf(ctfFile, psdFile=None)[source]¶