emantomo package

Subpackages

• emantomo.convert package
  • Submodules
    • emantomo.convert.convert module
    • emantomo.convert.dataimport module
  • Module contents
• emantomo.protocols package
  • Submodules
    • emantomo.protocols.protocol_align_ts module
    • emantomo.protocols.protocol_average_subtomos module
    • emantomo.protocols.protocol_classify_subtomos module
    • emantomo.protocols.protocol_estimate_ctf module
    • emantomo.protocols.protocol_resize_tomograms module
    • emantomo.protocols.protocol_tomo_boxing module
    • emantomo.protocols.protocol_tomo_boxing_convnet module
    • emantomo.protocols.protocol_tomo_extraction_from_tomo module
    • emantomo.protocols.protocol_tomo_extraction_from_ts module
    • emantomo.protocols.protocol_tomo_fill_mw module
    • emantomo.protocols.protocol_tomo_initialmodel module
    • emantomo.protocols.protocol_tomo_reconstruction module
    • emantomo.protocols.protocol_tomo_subtomogram_refinement module
    • emantomo.protocols.protocol_tomo_template_match module
    • emantomo.protocols.protocol_tomo_tilt_refine module
  • Module contents
• emantomo.viewers package
  • Submodules
    • emantomo.viewers.viewers module
    • emantomo.viewers.viewers_data module
    • emantomo.viewers.views_tkinter_tree module
  • Module contents

Submodules

• emantomo.bibtex module
• emantomo.constants module
• emantomo.e2converter module
• emantomo.e2ih module
• emantomo.wizards module

Module contents

class emantomo.Plugin

Bases: pwem.Plugin

classmethod createEmanProcess(script='e2converter.py', args=None, direc='.')

Open a new Process with all EMAN environment (python…etc) that will serve as an adaptor to use EMAN library

classmethod defineBinaries(env)

Define required binaries in the given Environment.

classmethod getActiveVersion(home=None, versions=None)

Return the version of the binaries that are currently active. In the current implementation it will be inferred from the *_HOME variable, so it should contain the version number in it.

classmethod getEmanActivation(version='2.91_211111')

classmethod getEmanCommand(program, args, python=False)

classmethod getEnviron()

Setup the environment variables needed to launch Eman.

classmethod getProgram(program, python=False)

Return the program binary that will be used.

classmethod isVersion(version='2.91_211111')