emantomo.protocols.protocol_tomo_reconstruction module

class emantomo.protocols.protocol_tomo_reconstruction.EmanProtTomoReconstruction(**kwargs)

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

This protocol wraps e2tomogram.py EMAN2 program.

Tomogram reconstruction from aligned tilt series. Tomograms are not normally reconstructed at full resolution, generally limited to 1k x 1k or 2k x 2k, but the tilt-series are aligned at full resolution. For high resolution subtomogram averaging, the raw tilt-series data is used, based on coordinates from particle picking in the downsampled tomograms. On a typical workstation reconstruction takes about 4-5 minutes per tomogram.

choices = ['1k', '2k', '4k']

createCommandStep()

createOutputStep()

static getAngleStepFromSeries(ts)

This method return the average angles step from a series.

resolution = {'1k': 1024, '2k': 2048, '4k': 4096}