emantomo.protocols.protocol_tomo_extraction_from_tomo module

class emantomo.protocols.protocol_tomo_extraction_from_tomo.EmanProtTomoExtraction(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

Extraction for Tomo. Uses EMAN2 e2spt_boxer_old.py.

OUTPUT_PREFIX = 'outputSetOfSubtomogram'
convertOutput()[source]
coordsFileName = None
createOutputStep()[source]
extractParticles()[source]
getInputTomograms()[source]

Return the tomogram associated to the ‘SetOfCoordinates3D’ or ‘Other’ tomograms.

lines = []
readSetOfSubTomograms(tomoFile, outputSubTomogramsSet, coordSet, volId, factor)[source]
samplingRateTomo = None
tomoFiles = []
writeSetOfCoordinates3D()[source]