emantomo.protocols.protocol_tomo_extraction_from_tomo module¶
- class emantomo.protocols.protocol_tomo_extraction_from_tomo.EmanProtTomoExtraction(**kwargs)[source]¶
Bases:
pwem.protocols.protocol.EMProtocol
,tomo.protocols.protocol_base.ProtTomoBase
Extraction for Tomo. Uses EMAN2 e2spt_boxer_old.py.
- OUTPUT_PREFIX = 'outputSetOfSubtomogram'¶
- coordsFileName = None¶
- getInputTomograms()[source]¶
Return the tomogram associated to the ‘SetOfCoordinates3D’ or ‘Other’ tomograms.
- lines = []¶
- samplingRateTomo = None¶
- tomoFiles = []¶