emantomo.protocols.protocol_tomo_subtomogram_refinement module¶
- class emantomo.protocols.protocol_tomo_subtomogram_refinement.EmanProtTomoRefinement(**kwargs)[source]¶
Bases:
pwem.protocols.protocol.EMProtocol
,tomo.protocols.protocol_base.ProtTomoBase
This protocol wraps e2spt_refine.py EMAN2 program.
Protocol to performs a conventional iterative subtomogram averaging using the full set of particles. It will take a set of subtomograms (particles) and a subtomogram(reference, potentially comming from the initial model protocol) and 3D reconstruct a subtomogram. It also builds a set of subtomograms that contains the original particles plus the score, coverage and align matrix per subtomogram .
- OUTPUT_DIR = 'spt_00'¶
- OUTPUT_PREFIX = 'outputSetOfClassesSubTomograms'¶