emantomo.protocols.protocol_classify_subtomos module

class emantomo.protocols.protocol_classify_subtomos.EmanProtTomoClassifySubtomos(**kwargs)

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

This protocol wraps e2spt_classify.py EMAN2 program. Protocol to performs a conventional iterative subtomogram averaging using the full set of particles. It will take a set of subtomograms (particles) and a set of Averages(reference) and 3D reconstruct a subtomogram. It also builds a set of subtomograms that contains the original particles plus the score, coverage and align matrix per subtomogram .

OUTPUT_DIR = 'spt_00'

OUTPUT_PREFIX = 'outputSetOf3DClassesSubTomograms'

convertInputStep()

createOutputStep()

pcaClassification()

Run the pca classification.