cistem.protocols.protocol_picking module

class cistem.protocols.protocol_picking.CistemProtFindParticles(**kwargs)[source]

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto

Protocol to pick particles (ab-initio or reference-based) using cisTEM.

convertInputStep(micsId, refsId)[source]

Match ctf information against the micrographs.

createOutputStep()[source]

Read the coordinates and define outputs.

getInputMicrographs()[source]
getInputReferences()[source]
readCoordsFromMics(extraDir, micList, coordSet)[source]

Overwrite base class function.