# **************************************************************************
# *
# * Authors: Laura del Cano (ldelcano@cnb.csic.es)
# * Yunior C. Fonseca Reyna (cfonseca@cnb.csic.es)
# *
# *
# * Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 3 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307 USA
# *
# * All comments concerning this program package may be sent to the
# * e-mail address 'scipion@cnb.csic.es'
# *
# **************************************************************************
from os.path import exists
from pwem.objects import Coordinate
import pwem.emlib.metadata as md
[docs]class DogpickerImport:
def __init__(self, protocol):
self.protocol = protocol
[docs] def importCoordinates(self, fileName, addCoordinate):
print("In importCoordinates Appion with filename=%s" % fileName)
if exists(fileName):
mdata = md.MetaData()
mdata.readPlain(fileName, 'xcoor ycoor')
for objId in mdata:
x = mdata.getValue(md.MDL_XCOOR, objId)
y = mdata.getValue(md.MDL_YCOOR, objId)
coord = Coordinate()
coord.setPosition(x, y)
addCoordinate(coord)