# **************************************************************************
# *
# * Authors: Laura del Cano (ldelcano@cnb.csic.es)
# * Yunior C. Fonseca Reyna (cfonseca@cnb.csic.es) [1]
# *
# * [1] Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 3 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307 USA
# *
# * All comments concerning this program package may be sent to the
# * e-mail address 'scipion@cnb.csic.es'
# *
# **************************************************************************
"""
This package contains the protocols and data for APPION
"""
import os
import pwem
from pyworkflow.utils import Environ
from .constants import DOGPICKER_HOME, V0_2_1_1
__version__ = '3.0.3'
_references = ['Voss2009']
_logo = 'appion_logo.png'
[docs]class Plugin(pwem.Plugin):
_homeVar = DOGPICKER_HOME
_pathVars = [DOGPICKER_HOME]
_supportedVersions = V0_2_1_1
@classmethod
def _defineVariables(cls):
cls._defineEmVar(DOGPICKER_HOME, 'dogpicker-0.2.1.1')
[docs] @classmethod
def getEnviron(cls):
""" Setup the environment variables needed to launch Appion. """
environ = Environ(os.environ)
environ.update({
'PATH': Plugin.getHome(),
'LD_LIBRARY_PATH': str.join(cls.getHome(), 'appionlib')
+ ":" + cls.getHome(),
}, position=Environ.BEGIN)
return environ
[docs] @classmethod
def isVersionActive(cls):
return cls.getActiveVersion().startswith(V0_2_1_1)
[docs] @classmethod
def defineBinaries(cls, env):
# Add dogpicker
env.addPackage('dogpicker', version='0.2.1.1',
tar='dogpicker-0.2.1.1.tgz',
default=True)