This tutorial requires, in addition to Scipion (plugins scipion-em-chimera and scipion-em-phenix ), the PHENIX suite. This tutorial has been tested for the PHENIX v. 1.20.1-4487. AlphaFold version 2.1.1 or upgraded should be installed to predict locally multimer structures.
2.2. We’d like to hear from you
We have tested and verified the different steps described in this demo to the best of our knowledge, but since our programs are in continuous development you may find inaccuracies and errors in the text. Please let us know about any errors, as well as your suggestions for future editions, by writing to email@example.com.