tomo.protocols.protocol_tomo_to_mics module

class tomo.protocols.protocol_tomo_to_mics.Prot2DcoordsTo3DCoords(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol

Turns 2d coordinates into set of 3d coordinates. Works in coordination with ‘tomograms to micrographs’ protocol

createOutputStep()[source]
class tomo.protocols.protocol_tomo_to_mics.Prot2DcoordsTo3DCoordsOutput[source]

Bases: enum.Enum

An enumeration.

outputCoordinates = <tomo.objects.SetOfCoordinates3D object>
class tomo.protocols.protocol_tomo_to_mics.ProtTomoToMics(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol

Turns tomograms into set of micrographs to apply SPA picking methods.

appendMicsFromTomogram(output, tomo)[source]
createOutputStep()[source]
class tomo.protocols.protocol_tomo_to_mics.ProtTomoToMicsOutput[source]

Bases: enum.Enum

An enumeration.

outputMicrographs = <pwem.objects.data.SetOfMicrographs object>
tomo.protocols.protocol_tomo_to_mics.sliceAndNameFromMicName(micname)[source]

Extracts z and tomo name from a micname composed with tomoSliceToMicName

tomo.protocols.protocol_tomo_to_mics.tomoSliceToMicName(tomo, slice)[source]