tomo.protocols.protocol_extract_coordinates module

class tomo.protocols.protocol_extract_coordinates.ProtTomoExtractCoords(**kwargs)

Bases: ProtTomoPicking

Extract the coordinates information from a set of subtomograms.

This protocol is useful when we want to re-extract the subtomograms (maybe resulting from classification) with the original dimensions. It can be also handy to visualize the resulting subtomograms in their location on the tomograms.

createOutputStep()

extractCoordinatesStep()

getInputSubTomos()

getInputTomos()

getSuffix(suffix)

getTmpOutputPath(suffix)