cryocare package

Module contents

class cryocare.Plugin[source]

Bases: pwem.Plugin

classmethod defineBinaries(env)[source]

Define required binaries in the given Environment.

classmethod getCryocareEnvActivation()[source]
classmethod getDependencies()[source]
classmethod getEnviron(gpuId='0')[source]

Setup the environment variables needed to launch cryocare.

classmethod runCryocare(protocol, program, args, cwd=None, gpuId='0')[source]

Run cryoCARE command from a given protocol.