continuousflex.protocols.pdb.protocol_convert_pdb module

class continuousflex.protocols.pdb.protocol_convert_pdb.FlexProtConvertPdb(**kwargs)

Bases: pwem.protocols.protocol_3d.ProtInitialVolume

Convert a PDB file into a volume.

IMPORT_FROM_FILES = 2

IMPORT_FROM_ID = 0

IMPORT_OBJ = 1

convertPdbStep()

Although is not mandatory, usually is used by the protocol to register the resulting outputs in the database.

createOutput()

pdbDownloadStep()

Download all pdb files in file_list and unzip them.