# **************************************************************************
# *
# * Authors: J.M. De la Rosa Trevin (delarosatrevin@gmail.com)
# *
# * Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 2 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307 USA
# *
# * All comments concerning this program package may be sent to the
# * e-mail address 'jmdelarosa@cnb.csic.es'
# *
# **************************************************************************
import os
from numpy import genfromtxt, isnan
from pyworkflow.viewer import Viewer, DESKTOP_TKINTER
from pwem.viewers.plotter import EmPlotter
from pkpd.protocols import ProtPKPDStatsMahalanobis
[docs]class PKPDStatsMahalanobisViewer(Viewer):
_targets = [ProtPKPDStatsMahalanobis]
_environments = [DESKTOP_TKINTER]
[docs] def visualize(self, obj, **kwargs):
prot = obj
fn = prot._getExtraPath('D11.txt')
if os.path.exists(fn):
D11 = genfromtxt(fn)
plotter = EmPlotter(style='seaborn-whitegrid')
plotter.createSubPlot("Histogram of D11", "D11", "Count")
plotter.plotHist(D11[~isnan(D11)], 50)
plotter.show()
fn = prot._getExtraPath('D12.txt')
if os.path.exists(fn):
D12 = genfromtxt(fn)
plotter = EmPlotter(style='seaborn-whitegrid')
plotter.createSubPlot("Histogram of D12", "D12", "Count")
plotter.plotHist(D12[~isnan(D12)], 50)
plotter.show()