# **************************************************************************
# *
# * Authors: Carlos Oscar Sorzano (info@kinestat.com)
# *
# * Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 2 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307 USA
# *
# * All comments concerning this program package may be sent to the
# * e-mail address 'jmdelarosa@cnb.csic.es'
# *
# **************************************************************************
from pyworkflow.protocol.params import PointerParam, StringParam
from pwem.protocols import BatchProtocol
from .protocol_pkpd import ProtPKPD
import copy
[docs]class BatchProtCreateExperiment(BatchProtocol, ProtPKPD):
""" Create experiment.\n
Protocol created by http://www.kinestatpharma.com
"""
_label = 'create experiment'
def _defineParams(self, form):
form.addHidden('inputExperiment', PointerParam, pointerClass='EMObject')
form.addHidden('listOfSamples', StringParam)
form.addHidden('newTitle', StringParam)
form.addHidden('newComment', StringParam)
#--------------------------- INSERT steps functions --------------------------------------------
def _insertAllSteps(self):
self._insertFunctionStep('createOutputStep')
#--------------------------- STEPS functions --------------------------------------------
[docs] def createOutputStep(self):
experiment = self.readExperiment(self.inputExperiment.get().fnPKPD)
newExperiment = experiment.subset(self.listOfSamples.get().split(';'))
newExperiment.general["title"]=self.newTitle.get().strip()
newExperiment.general["comment"]=self.newComment.get().strip()
self.writeExperiment(newExperiment,self._getPath("experiment.pkpd"))
self._defineOutputs(outputExperiment=newExperiment)
self._defineSourceRelation(self.inputExperiment, newExperiment)