Source code for continuousflex.protocols.utilities.mwr_wrapper

import continuousflex
import os
import tkinter.messagebox as tk


[docs]def mwr(path_vol_in, path_wedge, path_vol_out, sigma_noise, T, Tb, beta, mask_shifted): # Function to run the missing wedge restoration matlab wrapper wrapper_path = continuousflex.__path__[0] + '/protocols/utilities/' if os.getenv('MATLAB_HOME') is None: tk.showerror('Error', 'MATLAB_HOME is not set in your path, it should be set to use this method. ' 'We assume that matlab executable is at $MATLAB_HOME/bin/matlab') matlab = os.getenv('MATLAB_HOME') + '/bin/matlab' command = matlab command += ' -nodisplay -nosplash -nodesktop -r ' command += '"addpath(genpath(' command += "'" + wrapper_path + "'));mwr_wrapper(" command += "'" + path_vol_in + "', '" command += path_wedge + "', '" command += path_vol_out + "', " command += str(sigma_noise) + ", " command += str(T) + ", " command += str(Tb) + ", " command += str(beta) + ", " if mask_shifted: command += 'true' command += ');exit;"' # print(command) os.system(command) pass