Source code for chimera.protocols.protocol_operate

# **************************************************************************
# *
# * Authors:     Grigory Sharov (sharov@igbmc.fr)
# *              Marta Martinez (mmmtnez@cnb.csic.es)
# *              Roberto Marabini (roberto@cnb.csic.es)
# *
# * L'Institut de genetique et de biologie moleculaire et cellulaire (IGBMC)
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 2 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307  USA
# *
# *  All comments concerning this program package may be sent to the
# *  e-mail address 'scipion@cnb.csic.es'
# *
# **************************************************************************

from .protocol_base import ChimeraProtBase


[docs]class ChimeraProtOperate(ChimeraProtBase): # """This protocol provides access to Chimera and allows to save the result in Scipion framework. # Execute command *scipionwrite [model #n] [refmodel #p] # [saverefmodel 0|1]* from command line in order to transferm fitted # pdb to scipion. Default values are model=#0, # refmodel =#1 and saverefmodel 0 (false). # model refers to the pdb file. refmodel to a 3Dmap""" """This protocol provides access to Chimera and allows to save the result in Scipion framework. Execute command *scipionwrite #n [prefix stringAddedToFilename] model refers to the pdb file""" _label = 'operate'