# **************************************************************************
# *
# * Authors: Daniel Del Hoyo (ddelhoyo@cnb.csic.es)
# *
# * Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 3 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307 USA
# *
# * All comments concerning this program package may be sent to the
# * e-mail address 'scipion@cnb.csic.es'
# *
# **************************************************************************
from pwem.viewers import ChimeraAttributeViewer
from ..protocols import ProtRMSDAtomStructs
[docs]class ChimeraRMSDViewer(ChimeraAttributeViewer):
""" Viewer for attribute RMSD score of an AtomStruct.
Includes visualization in chimera and in histograms"""
_targets = [ProtRMSDAtomStructs]
_label = 'Atomic structure attributes viewer'
def __init__(self, **kwargs):
super().__init__(**kwargs)
def _defineParams(self, form):
super()._defineParams(form)
# Overwrite defaults
from pwem.wizards.wizard import ColorScaleWizardBase
group = form.addGroup('Color settings')
ColorScaleWizardBase.defineColorScaleParams(group, defaultLowest=0, defaultHighest=2, defaultIntervals=21,
defaultColorMap='RdBu')