reliontomo.protocols.protocol_base_tomo module¶
This module contains the protocol base class for Relion protocols
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class
reliontomo.protocols.protocol_base_tomo.
ProtRelionBaseTomo
(**args)[source]¶ Bases:
pwem.protocols.protocol.EMProtocol
This class cointains the common functionalities for all Relion protocols. In subclasses there should be little changes about how to create the command line and the files produced.
Most of the Relion protocols, have two modes: NORMAL or CONTINUE. That’s why some of the function have a template pattern approach to define the behaivour depending on the case.
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FILE_KEYS
= ['data', 'optimiser', 'sampling']¶
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OUTPUT_TYPE
¶ alias of
pwem.objects.data.SetOfClasses3D
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PREFIXES
= ['']¶
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claasesTable
= <emtable.metadata.Table object>¶
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dataTable
= <emtable.metadata.Table object>¶
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modelTable
= <emtable.metadata.Table object>¶
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nClasses
= 0¶
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