Advanced Development Topics¶
Most of the Scipion graphic user interfaces (GUIs) to visualize EM objects (particles, coordinates, volumes, etc) have been developed in Java, extending Xmipp ShowJ and Particle Picker. Implementation details are available [here].
- Web developments and tools
- Conventions: Description of the conventions followed in Scipion.
Scipion from the command line¶
There are many things you can do with Scipion using just the command line, like running tests, starting the webserver, or opening a ShowJ viewer. Read this [page] to learn how.
Profiling and Debugging¶
- Check what can be reused from here: https://github.com/I2PC/xmipp-portal/wiki/DebuggingProfiling, check with Juan if he has some NOTES about profiling
- Profiling in C/C++: Valgrind
- Debugging in Python: with PyCharm and WinPdb
- Profiling Python with Intel VTune Profiler
ScipionCloud main “cloud platforms” are Amazon Web Services (AWS) and EGI Federated Cloud (FedCloud)