tomo.protocols.protocol_ts_correct_motion module¶
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class
tomo.protocols.protocol_ts_correct_motion.
ProtTsAverage
(**kwargs)[source]¶ Bases:
tomo.protocols.protocol_ts_correct_motion.ProtTsCorrectMotion
Simple protocol to average TiltSeries movies as basic motion correction. It is used mainly for testing purposes.
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class
tomo.protocols.protocol_ts_correct_motion.
ProtTsCorrectMotion
(**kwargs)[source]¶ Bases:
tomo.protocols.protocol_ts_base.ProtTsProcess
Base class for movie alignment protocols such as: motioncorr, crosscorrelation and optical flow
Alignment parameters are defined in common. For example, the frames range used for alignment and final sum, the binning factor or the cropping options (region of interest)
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createOutputStep
()[source]¶ ” Overwrites the parent method to allow te creation of odd and even outputs
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evenAvgFrameList
= []¶
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evenOddCapable
= False¶
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oddAvgFrameList
= []¶
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outputSetEven
= None¶
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outputSetOdd
= None¶
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tsMList
= []¶
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