relion.protocols.protocol_autopick_ref module¶
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class
relion.protocols.protocol_autopick_ref.
ProtRelion2Autopick
(**args)[source]¶ Bases:
relion.protocols.protocol_autopick.ProtRelionAutopickBase
This protocol runs Relion autopicking (version > 3.0).
This Relion protocol uses the ‘relion_autopick’ program to pick particles from micrographs, either using references (2D averages or 3D volumes)
The wrapper implementation does not read/write any FOM maps compared to Relion
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convertInputStep
(micsId, refsId)[source]¶ Create the input file in STAR format as expected by Relion. If the input particles comes from Relion, just link the file. Params:
- particlesId: use this parameters just to force redo of convert if
- the input particles are changed.
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