pwem.protocols.protocol_export.protocol_export_DB module¶

class pwem.protocols.protocol_export.protocol_export_DB.ProtExportDataBases(**kwargs)[source]¶

Bases: pwem.protocols.protocol.EMProtocol

generates files for elements to submit structures to EMDB/PDB. Since mmcif/pdb is only partially supported by some software the protocol creates 4 versions of the atomic struct file with the hope that at least one of them will work.

ADDITIONALVOLUMEDIR = 'addMaps'¶

ADDITIONALVOLUMENAME = 'map_%02d.mrc'¶

COORDINATEFILENAME = 'coordinates.cif'¶

HALFVOLUMENAME = 'half_map_%d.mrc'¶

MASKDIR = 'masks'¶

MASKNAME = 'mask_%02d.mrc'¶

SYMPLIFIED_STRUCT = 'symplified_atom_structure.cif'¶

VOLUMENAME = 'main_map.mrc'¶

createDirectoryStep(dirPath)[source]¶

exportAdditionalVolumeStep()[source]¶

exportAtomStructStep()[source]¶

exportFSCStep()[source]¶

exportImageStep()[source]¶

exportMasksStep()[source]¶

exportVolumeStep()[source]¶

getFnPath(label='volume')[source]¶