eman2.protocols.protocol_autopick_boxer module

class eman2.protocols.protocol_autopick_boxer.EmanProtAutopick(**kwargs)[source]

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto

Automated particle picker for SPA. Uses EMAN2 (versions 2.2+) e2boxer.py

convertInputStep()[source]
createOutputStep()[source]
getCoordsDir()[source]
getFiles()[source]
readCoordsFromMics(workingDir, micList, coordSet)[source]

This method should be implemented in subclasses to read the coordinates from a given list of micrographs.