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      • cistem.convert package
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  • cistem package
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cistem package¶

Subpackages¶

  • cistem.convert package
    • Submodules
      • cistem.convert.convert module
      • cistem.convert.dataimport module
    • Module contents
  • cistem.protocols package
    • Submodules
      • cistem.protocols.program_ctffind module
      • cistem.protocols.protocol_abinitio module
      • cistem.protocols.protocol_ctffind module
      • cistem.protocols.protocol_picking module
      • cistem.protocols.protocol_refine2d module
      • cistem.protocols.protocol_ts_ctffind module
      • cistem.protocols.protocol_unblur module
    • Module contents

Submodules¶

  • cistem.bibtex module
  • cistem.constants module
  • cistem.viewers module
  • cistem.wizards module

Module contents¶

class cistem.Plugin[source]¶

Bases: pwem.Plugin

classmethod defineBinaries(env)[source]¶

Define required binaries in the given Environment.

classmethod getEnviron()[source]¶

Setup the environment variables needed to launch cisTEM.

classmethod getProgram(program)[source]¶

Return the program binary that will be used.

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