Model Building Tutorial
=======================

This tutorial shows a workflow aimed at obtaining 
high-quality atomic models from cryo-EM data by 
using scipion software framework.

Contents
--------
.. toctree::
   :maxdepth: 1
   :numbered:

   005-versionhistory
   007-requirements
   010-introduction
   020-problem2solve
   030-inputDataDescription
   040-importInputData
   050-volumeScenario
   060-sequenceScenario
   070-movingFromSequence
   080-rigidFit
   090-flexibleFit
   100-validation
   110-unitcell
   120-macromolecule
   121-submissionResults
   130-install
   131-problems
   140-todo
   z010-references

Appendices
----------
.. toctree::
   :maxdepth: 1
   :numbered:

   a010-answers
   a011-atomStructUtilsOperatorProtocol
   a012-chimeraContacts
   a013-chimeraMapSubtraction
   a020-chimeraOperate
   a030-chimeraRestoreSession
   a040-chimeraRigidFit
   a050-ccp4CootRefinement
   a060-ccp4Refmac
   a061-create3DMask
   a062-deepEMhancerSharpening
   a070-extractUnitCell
   a080-importAtomicStructure
   a090-importSequence
   a091-importMask
   a100-importvolume
   a101-localDeblurSharpening
   a102-localMonoRes
   a110-modelFromTemplate
   a120-emRingerProtocol
   a130-molprobityProtocol
   a131-valCryoEMProtocol
   a140-realSpaceRefineProtocol
   a150-superposePdbsProtocol
   a160-dockInMapProtocol
   a161-searcFitProtocol
   a162-asignOrigAndSampling
   a170-exportToEMDB