.. figure:: /docs/images/scipion_logo.gif :width: 250 :alt: scipion logo .. _legacy-release-notes: ============================ Legacy release notes ============================ v.0.2.2 Titanium (6 Feb 2014) ----------------------------- * Export/Import workflow template in .json format * Improved Runs Graph: (expand/collapse, small nodes, tooltips and keep positions) * Get working the Relion polishing * Review and update of the tutorials (specially the introductory one) * Updated Spider protocols and tools * Last fixes after Initial Volume WebTool * MPI steps parallelization improved (95%) v.0.1.4 Sillicon (6 Jun 2014) ----------------------------- * Improved handling of large logs files (preview, refresh, colors...for web and tk) * Fixed the use of MPI process in Parallel Protocols. * Stored protocol steps in a separated .sqlite file (for performance) * Stored objects creation time. * Allowed selection of individual items from a set. * Completion of the MDA workflow with all protocols and updated the Spider script parsing (Tapu visit) and Custom mask wizard * More processing tests with ribo tutorial, and PcV viruses. * Showj visualization now directly from the .sqlite files...Improved the Creation of subsets v.0.1.3 Aluminium (9 May 2014) -------------------------------- * Managing multiple runs selection (in Tk and Web): Copy and Delete * Re-factored the Visualizers to use "Views", now more centralized between Tk and Web * Re-factored the wizards in Web * Improved read of big log files. * Test files are centralized in DataSets and their are automatically downloaded. * Added Groups and Lines for more compact parameters in Protocol Form (also working with Expert Level and Condition) * Improved developer documentation (architecture and welcome guide) v.0.1.2 Magnesium (10 Apr 2014) -------------------------------- * Relion protocols completed (2D, 3D refine and classify, wizards, viewer...and web) * Frealign 9.07 update (refine, wizards, viewers...and web) * Protocols to import/export EMX format * Created Protocol steps view * Created Data view (and checked Relations inheritance, such as CTF) * Improved tests datasets and classes. * Improved way to create Materials & Methods, citations and summary (added bibtex parsing) * Centralized execution under *scipion* entry script (also generation of stats) * More protocols added from Scipion week v.0.1.1 Sodium (10 Mar 2014) ---------------------------- * Missing release, due SAB visit. v.0.1.0 Neon (10 Feb 2014) --------------------------- * Missing release, due Scipion week for Xmipp protocols porting. v.0.0.9 Fluor (10 Jan 2014) ---------------------------- * Mainly documentation and bug fixing. v.0.0.8 Oxygen (18 Dic 2013) ---------------------------- * Changes: * BIG re-design, in both Web and Tk interfaces (automatic refresh also) * Wizards and Analyze results refined. * Added Twiki small subset of hypertext tags for Helps and Summaries * Scipion Day and several starting protocols. * Known issues: * Memory leak (when the Tkinter GUI is open for long time, the RAM is consumed) * Performance issues with big datasets (Laura issues and RM complaints) * Need to handle multiple plots from Analyze results in Web (example ML3D) v.0.0.7 Nitrogen (11 Nov 2013) ------------------------------- * Added relations (For CTF, Alignment is missing) * Developed first SPIDER protocols (align, filter, dimension reduction and classification) MDA workflow * Included protocol viewer with Forms( ProtocolViewer) in Tkinter and Web * More wizards for Tkinter and Web (adapted for SPIDER protocols) * Improved protocols main interface. v.0.0.6 Carbon (4 Oct 2013) --------------------------- * Data classes are not sub-classes per packages, now they have a common Scipion representation and storage (sqlite). Added related convert.py modules for conversion. * Web: fix styles, wizards. v.0.0.5 Boron (5 Sept 2013) --------------------------- * Missed release due vacations of team members v.0.0.4 Beryllium (6 Aug 2013) ------------------------------ * Design changes: * All elements in a Set should contains an unique ID inside the set, that should be maintained in transformations of the set. * Eman version have been changed to 2.1, carrying different access using hdf and json * Xmipp protocols: * OnlyAlignCL2D * RotSpectra * KerdenSOM * ML3D * Filters, Mask * Eman protocols: * Boxing * Initial model * GUI * Graph tree is working on Web * Wizards on Tkinter * Form improved, now using Tabs, include summary and parameters validations. * Basic analyze results of some protocols. * First try with web visualization of volumes with Astex and Chimera-WebGL * Tests * Update new tests for protocols. * Running Buildbot for continuous integration. v.0.0.3 Lithium (5 Jul 2013) ---------------------------- * Protocol execution: * Basic launch and update of protocols. * Some Xmipp protocols, starting with Eman boxing, CTFFIND included * GUI * Graph tree is working on Tkinter * Basic way of editing execution hosts and Host view in projects. * Tests * Setup of the general organization of the tests and creation of several ones. * First try with Buildbot