xmipp3.protocols package ======================== Subpackages ----------- .. toctree:: :maxdepth: 4 xmipp3.protocols.protocol_preprocess xmipp3.protocols.protocol_projmatch Submodules ---------- .. toctree:: :maxdepth: 4 xmipp3.protocols.protocol_align_volume xmipp3.protocols.protocol_align_volume_and_particles xmipp3.protocols.protocol_analyze_local_ctf xmipp3.protocols.protocol_angular_graph_consistency xmipp3.protocols.protocol_angular_resolution_alignment xmipp3.protocols.protocol_apply_alignment xmipp3.protocols.protocol_apply_transformation_matrix xmipp3.protocols.protocol_apply_zernike3d xmipp3.protocols.protocol_assignment_tilt_pair xmipp3.protocols.protocol_break_symmetry xmipp3.protocols.protocol_center_particles xmipp3.protocols.protocol_cl2d xmipp3.protocols.protocol_cl2d_align xmipp3.protocols.protocol_classes_2d_mapping xmipp3.protocols.protocol_compare_angles xmipp3.protocols.protocol_compare_reprojections xmipp3.protocols.protocol_consensus_classes xmipp3.protocols.protocol_consensus_local_ctf xmipp3.protocols.protocol_convert_pdb xmipp3.protocols.protocol_core_analysis xmipp3.protocols.protocol_create_gallery xmipp3.protocols.protocol_ctf_consensus xmipp3.protocols.protocol_ctf_correct_wiener2d xmipp3.protocols.protocol_ctf_defocus_group xmipp3.protocols.protocol_ctf_micrographs xmipp3.protocols.protocol_deep_center xmipp3.protocols.protocol_deep_hand xmipp3.protocols.protocol_deep_micrograph_screen xmipp3.protocols.protocol_denoise_particles xmipp3.protocols.protocol_eliminate_empty_images xmipp3.protocols.protocol_enrich xmipp3.protocols.protocol_extract_asymmetric_unit xmipp3.protocols.protocol_extract_particles xmipp3.protocols.protocol_extract_particles_movies xmipp3.protocols.protocol_extract_particles_pairs xmipp3.protocols.protocol_flexalign xmipp3.protocols.protocol_generate_reprojections xmipp3.protocols.protocol_helical_parameters xmipp3.protocols.protocol_kerdensom xmipp3.protocols.protocol_local_ctf xmipp3.protocols.protocol_ml2d xmipp3.protocols.protocol_movie_dose_analysis xmipp3.protocols.protocol_movie_gain xmipp3.protocols.protocol_movie_max_shift xmipp3.protocols.protocol_movie_opticalflow xmipp3.protocols.protocol_movie_split_frames xmipp3.protocols.protocol_multiple_fscs xmipp3.protocols.protocol_multireference_alignability xmipp3.protocols.protocol_normalize_strain xmipp3.protocols.protocol_particle_pick xmipp3.protocols.protocol_particle_pick_automatic xmipp3.protocols.protocol_particle_pick_consensus xmipp3.protocols.protocol_particle_pick_pairs xmipp3.protocols.protocol_particle_pick_remove_duplicates xmipp3.protocols.protocol_phantom_create xmipp3.protocols.protocol_pick_noise xmipp3.protocols.protocol_postProcessing_deepPostProcessing xmipp3.protocols.protocol_preprocess_micrographs xmipp3.protocols.protocol_random_conical_tilt xmipp3.protocols.protocol_ransac xmipp3.protocols.protocol_reconstruct_fourier xmipp3.protocols.protocol_reconstruct_highres xmipp3.protocols.protocol_reconstruct_significant xmipp3.protocols.protocol_reconstruct_swarm xmipp3.protocols.protocol_resolution3d xmipp3.protocols.protocol_resolution_bfactor xmipp3.protocols.protocol_resolution_deepres xmipp3.protocols.protocol_resolution_directional xmipp3.protocols.protocol_resolution_fso xmipp3.protocols.protocol_resolution_monogenic_signal xmipp3.protocols.protocol_rotate_volume xmipp3.protocols.protocol_rotational_symmetry xmipp3.protocols.protocol_screen_deepConsensus xmipp3.protocols.protocol_screen_deeplearning xmipp3.protocols.protocol_screen_particles xmipp3.protocols.protocol_shift_particles xmipp3.protocols.protocol_shift_volume xmipp3.protocols.protocol_simulate_ctf xmipp3.protocols.protocol_structure_map xmipp3.protocols.protocol_structure_map_zernike3d xmipp3.protocols.protocol_subtract_projection xmipp3.protocols.protocol_tilt_analysis xmipp3.protocols.protocol_trigger_data xmipp3.protocols.protocol_validate_fscq xmipp3.protocols.protocol_validate_nontilt xmipp3.protocols.protocol_validate_overfitting xmipp3.protocols.protocol_volume_adjust_sub xmipp3.protocols.protocol_volume_consensus xmipp3.protocols.protocol_volume_deform_zernike3d xmipp3.protocols.protocol_volume_local_adjust xmipp3.protocols.protocol_volume_local_sharpening xmipp3.protocols.protocol_volume_strain xmipp3.protocols.protocol_write_testC xmipp3.protocols.protocol_write_testP Module contents --------------- .. automodule:: xmipp3.protocols :members: :undoc-members: :show-inheritance: